PyTorch Connectomics: segmentation toolbox for EM connectomics

3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Official repository for the ProteinGym benchmarks

Single-cell sequencing is a novel technology to define intercellular heterogeneity, rare cell types, cell genealogies or disease evolution based on profiling thousands of cells in parallel. Identif…

A simple molecular dynamics code in python

Cooperative multi-robot object transport with obstacle avoidance

Curated list of project-based tutorials

This repository showcases various advanced techniques for Retrieval-Augmented Generation (RAG) systems. RAG systems combine information retrieval with generative models to provide accurate and cont…

Video+code lecture on building nanoGPT from scratch

Open source code for AlphaFold.

"Repository for implementing the Back-in-Time Diffusion method for detecting medical deepfakes in CT and MRI scans, including training and evaluation tools."

Official implementation of "Surgical-VQLA: Transformer with Gated Vision-Language Embedding for Visual Question Localized-Answering in Robotic Surgery", ICRA 2023.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Code for an integrated study conducted on vaginal 16S rRNA microbiome samples using Systems Biology and Machine Learning approaches for the prediction of Preterm Birth

Compilation of R and Python programming codes on the Data Professor YouTube channel.

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

A High Performance Microbiome Analysis Toolkit.