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1. rna-seq-pipeline rna-seq-pipeline Public

   Contains pipeline scripts for detecting coronavirus recombination and variants in RNA-seq datasets.

   Python 1 2

2. RecombiVIR RecombiVIR Public

   Forked from jgribble67/RecombiVIR

   Scripts that quantify and parse viral recombination detected in RNAseq and MinION datasets

   Python

3. CoV_Chimeras CoV_Chimeras Public

   Forked from jgribble67/CoV_Chimeras

   Scripts that identify and quantify inter-virus recombination from RNA-seq and Nanopore datasets

   Python

4. CoVariant CoVariant Public

   Forked from jgribble67/CoVariant

   Scripts that parse LoFreq variant files and annotate CoV mutations in RNAseq data

   Python

5. MutALink MutALink Public

   Forked from jgribble67/MutALink

   Scripts to detect and quantify variants present in the same RNA molecule (Nanopore)

   Jupyter Notebook