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Contig info file description
dbertran78 edited this page Jul 29, 2019
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Column name | Description |
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CONTIG_ID | contig identifier |
LENGTH | length |
SHORT_READ_COV | average short-read coverage |
LONG_READ_COV | average long-read coverage |
CLUSTER | OPERA-MS cluster that the contig belongs to |
SPECIES | closest reference species in OPERA-MS database for the assembled contig (identified using Mash) |
NB_STRAIN | number of strains detected by OPERA-MS for this species |
REFERENCE_GENOME | species reference ID |