system headers go first

zhengxwen · Mar 30, 2024 · d2a156a · d2a156a
1 parent 169b9a1
commit d2a156a
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Showing 8 changed files with 11 additions and 16 deletions.
diff --git a/src/ConvGDS2VCF.cpp b/src/ConvGDS2VCF.cpp
@@ -19,11 +19,11 @@
 // along with SeqArray.
 // If not, see <http://www.gnu.org/licenses/>.
 
-#include "Index.h"
-#include "vectorization.h"
 #include <cstdio>
 #include <cstring>
 #include <vector>
+#include "Index.h"
+#include "vectorization.h"
 
 using namespace std;
 

diff --git a/src/ConvToGDS.cpp b/src/ConvToGDS.cpp
@@ -19,8 +19,8 @@
 // along with SeqArray.
 // If not, see <http://www.gnu.org/licenses/>.
 
-#include "Index.h"
 #include <vector>
+#include "Index.h"
 
 using namespace std;
 using namespace SeqArray;

diff --git a/src/ConvVCF2GDS.cpp b/src/ConvVCF2GDS.cpp
@@ -19,11 +19,11 @@
 // along with SeqArray.
 // If not, see <http://www.gnu.org/licenses/>.
 
-#include "Index.h"
-#include "vectorization.h"
 #include <vector>
 #include <set>
 #include <algorithm>
+#include "Index.h"
+#include "vectorization.h"
 
 
 // 1: load format field except GT

diff --git a/src/FileMerge.cpp b/src/FileMerge.cpp
@@ -19,9 +19,9 @@
 // along with SeqArray.
 // If not, see <http://www.gnu.org/licenses/>.
 
-#include "Index.h"
 #include <set>
 #include <algorithm>
+#include "Index.h"
 #include "ReadByVariant.h"
 #include "ReadBySample.h"
 

diff --git a/src/Index.cpp b/src/Index.cpp
@@ -19,9 +19,8 @@
 // along with SeqArray.
 // If not, see <http://www.gnu.org/licenses/>.
 
+#include <cstdio>
 #include "Index.h"
-#include <stdio.h>
-#include <string.h>
 
 using namespace std;
 

diff --git a/src/Index.h b/src/Index.h
@@ -23,18 +23,16 @@
 #ifndef _HEADER_SEQ_INDEX_
 #define _HEADER_SEQ_INDEX_
 
-#include <R_GDS_CPP.h>
-#include <dTrait.h>
-
 #include <string>
 #include <vector>
 #include <list>
 #include <map>
 #include <set>
 #include <ctime>
-
 #include <cctype>
 #include <cstring>
+#include <dTrait.h>
+#include <R_GDS_CPP.h>
 #include "vectorization.h"
 
 

diff --git a/src/LinkSNPRelate.cpp b/src/LinkSNPRelate.cpp
@@ -21,7 +21,6 @@
 
 #include "ReadByVariant.h"
 #include "ReadBySample.h"
-
 #include <Rinternals.h>
 #include <R_ext/Rdynload.h>
 

diff --git a/src/SeqArray.cpp b/src/SeqArray.cpp
@@ -19,13 +19,12 @@
 // along with SeqArray.
 // If not, see <http://www.gnu.org/licenses/>.
 
-#include "Index.h"
 #include <set>
 #include <algorithm>
+#include <ctype.h>
+#include "Index.h"
 #include "ReadByVariant.h"
 #include "ReadBySample.h"
-#include <ctype.h>
-
 #include <Rinternals.h>
 #include <R_ext/Rdynload.h>