fix UniParc ID prefix clipping

svsgvarma · Jun 25, 2021 · c861af8 · c861af8
1 parent d751432
commit c861af8
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/db-scripts/init-ups-ips.py b/db-scripts/init-ups-ips.py
@@ -111,6 +111,8 @@ def is_taxon_child(child, LCA, taxonomy):
                         uniparc_id = uniparc_id.attrib['value'][3:]
                     else:
                         uniparc_id = rep_member_dbref.get('id', None) if rep_member_dbref.get('type', '') == 'UniParc ID' else None
+                        if uniparc_id is not None:
+                            uniparc_id = uniparc_id[3:]
                     conn.execute('INSERT INTO ups (hash, length, uniparc_id, uniref100_id) VALUES (?,?,?,?)', (seq_hash.digest(), length, uniparc_id, uniref100_id))
                     log_ups.info('INSERT INTO ups (hash, length, uniparc_id, uniref100_id) VALUES (%s,%s,%s,%s)', seq_hash_hexdigest, length, uniparc_id, uniref100_id)
                     db_updates += 1