The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.

Hybridization detection using phylogenetic invariants

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

Biodiversity Genomics Academy 2023: Genome profiling using GenomeScope

An R package to visualize chromosome scale repeat patterns and predict centromere locations.

Efficient phylogenomic software by maximum likelihood

RAxML Next Generation: faster, easier-to-use and more flexible

Topology weighting by iterative sampling of sub-trees

A software package for local ancestry inference and haplotype phasing

Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of …

Efficient Local Ancestry Inference

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

Comparing LAMP-LD, RFMix, and ELAI

RFMIX - Local Ancestry and Admixture Inference Version 2

Tutorial about R package PopGenome

利用个人的基因数据计算亲属关系

整理常用的群体遗传学分析流程和脚本

📐 Jekyll theme for building a personal site, blog, project documentation, or portfolio.

Construct and Analyze the North American Vitis pangenome

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

学习笔记：我的第一个github仓库

The hap-ibd program detects identity-by-descent segments in phased genotype data.

Mock Interview Simulator with AI-Powered Feedback

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"

Haplotype based scans for selection

Code to compute the XP-CLR statistic to infer natural selection

WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

A pipeline used to identify different modes of duplicated gene pairs