Long read / genome alignment software

Build haplotye and generate figures

Data Apps & Dashboards for Python. No JavaScript Required.

The codes to assemble two sorghum cultivars

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

The IntroBlocker ancestry inference algorithm

Python library to facilitate genome assembly, annotation, and comparative genomics

Drop in a screenshot and convert it to clean code (HTML/Tailwind/React/Vue)

Source code for JBrowse 2, a modern React-based genome browser

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

⚡️HivisionIDPhotos: a lightweight and efficient AI ID photos tools. 一个轻量级的AI证件照制作算法。

A conda-forge distribution.

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

QTL-seq pipeline to identify causative mutations responsible for a phenotype

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Tools for fast and flexible genome assembly scaffolding and improvement

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

The knowledge of cloned rice genes lost in the information of rice functional genomics studies

Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

Making Protein folding accessible to all!

A new markup-based typesetting system that is powerful and easy to learn.

Tool for Inverted Repeat detection of the Plastid Genomes

🦄 Scientific journal and sci-fi themed color palettes for ggplot2