Merge pull request #39 from jessicastockdale/master

Correction to NEWS
sempwn · Sep 17, 2021 · bef188e · bef188e
2 parents 6d69f63 + e3f5ee0
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diff --git a/NEWS.md b/NEWS.md
@@ -14,7 +14,7 @@
 
 * In `hom_plot_zeta_by_location()`, also takes optional `sort` variable.
 
-* In `hom_plot_incidence_by_location`, also takes optional `sort` variable.
+* In `hom_plot_incidence_by_location()`, also takes optional `sort` variable.
 
 
 # cr0eso 0.0.0.9001

diff --git a/docs/articles/BC_LTHC_additional_analysis.html b/docs/articles/BC_LTHC_additional_analysis.html
diff --git a/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-3-1.png
diff --git a/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-3-2.png b/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-3-2.png
diff --git a/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-7-2.png b/docs/articles/BC_LTHC_additional_analysis_files/figure-html/unnamed-chunk-7-2.png
diff --git a/docs/articles/BC_LTHC_additional_analysis_files/header-attrs-2.6/header-attrs.js b/docs/articles/BC_LTHC_additional_analysis_files/header-attrs-2.6/header-attrs.js
diff --git a/...s_files/header-attrs-2.10/header-attrs.js → ...is_files/header-attrs-2.8/header-attrs.js b/...s_files/header-attrs-2.10/header-attrs.js → ...is_files/header-attrs-2.8/header-attrs.js
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -5,5 +5,5 @@ articles:
   BC_LTHC_additional_analysis: BC_LTHC_additional_analysis.html
   BC_outbreak_data_fitting: BC_outbreak_data_fitting.html
   introduction_to_fitting: introduction_to_fitting.html
-last_built: 2021-09-17T17:32Z
+last_built: 2021-09-17T18:10Z
 
diff --git a/vignettes/BC_LTHC_additional_analysis.Rmd b/vignettes/BC_LTHC_additional_analysis.Rmd
@@ -42,8 +42,8 @@ set.seed(836361)
 The data is formatted as a list with 100 imputations of the missing symptom onset times. For each imputation, the list contains data on the number of cases, time series of cases (by symptom onset), the facility capacity and the outbreak reported date for each facility outbreak. It also contains the time series of cases as a matrix, but we will not use that here. 
 
 ```{r}
-# View the first imputation of missing data:
-str(BC_LTHC_outbreaks_100Imputs[[1]])
+# View the final imputation of missing data:
+str(BC_LTHC_outbreaks_100Imputs[[100]])
 
 ```
 ## Estimate R0 in each outbreak, using EG and ML methods