cleanup

schneebergerlab · May 22, 2024 · a006a7b · a006a7b
1 parent 181e5c3
commit a006a7b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/plotsr/scripts/plotsr.py b/plotsr/scripts/plotsr.py
@@ -223,7 +223,7 @@ def plotsr(args):
     allal = pdconcat([alignments[i][1] for i in range(len(alignments))])
     if ITX:
         minl = 0
-        MCHR = 0.01     # TODO : read spacing between neighbouring chromosome from config file
+        MCHR = cfg['marginchr']
         maxchr = max([sum(chrlengths[i][1].values()) for i in range(len(chrlengths))])
         maxl = int(maxchr/(MCHR + 1 - (MCHR*len(chrgrps))))
     elif cfg['maxl'] != -1: