show me the final prab

salvadorlab · Jan 6, 2024 · 0e86968 · 0e86968
1 parent 6542ee5
commit 0e86968
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/scripts/mbov_virulence.py b/scripts/mbov_virulence.py
@@ -14,12 +14,13 @@
 #return only rows that have the gene name matching in the annotation!
 filtered_list = [] 
 for i in range(len(mbov_prab.index)):
-    print(mbov_prab.loc[i,"Gene"])
-    print(mbov_prab.loc[i,"Gene"].split("_"))
-    print(mbov_prab.loc[i,"Gene"].split("_")[0])
+    #print(mbov_prab.loc[i,"Gene"])
+    #print(mbov_prab.loc[i,"Gene"].split("_"))
+    #print(mbov_prab.loc[i,"Gene"].split("_")[0])
     if mbov_prab.loc[i,"Gene"].split("_")[0] in virulent_gene_list:
         filtered_list.append(i)
         print("part of the list")
 #filter the rows with the passing indicies
 mbov_prab.iloc[filtered_list].to_csv("mbov_virulent_prab.csv",index=False)
+mbov_prab
 print("prab created successfully")