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1. netseq-pipeline netseq-pipeline Public

   Jupyter Notebook 1

2. netseq netseq Public

   A WDL workflow transforms the raw sequence reads from the NET-seq assay to occupancy counts.

   WDL 1 1

3. netseq-to-changepoint netseq-to-changepoint Public

   A WDL workflow that estimates the location(s) of abrupt changes in RNAPII occupancy during transcriptional elongation.

   R 1

4. GPosExperiment GPosExperiment Public

   An R package that extends Experiment

   R 1

5. spacexr spacexr Public

   Forked from dmcable/spacexr

   Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

   HTML 1

6. Reversible-Jump-PDMP-Samplers Reversible-Jump-PDMP-Samplers Public

   Forked from matt-sutton/Reversible-Jump-PDMP-Samplers

   Implementation and reproducible git of the reversible jump PDMP samplers for Variable Selection (Chevallier, Fearnhead, Sutton).

   C++