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Harmonize operon gene alleles #190

Merged
merged 8 commits into from
Feb 7, 2023
Merged

Harmonize operon gene alleles #190

merged 8 commits into from
Feb 7, 2023

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oschwengers
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@oschwengers oschwengers commented Feb 7, 2023 •
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CDS gene symbol assignments can be improved in several situations (#186 ).

One particular case is the selection of appropriate gene symbols within an operon if multiple gene symbols of varying prefixes are available:

...
251126        253897        -       tssH            type VI secretion system ATPase TssH
253906        254667        -       icmH,tssL       type VI secretion system protein TssL
254672        256003        -       tssK            type VI secretion system baseplate subunit TssK
...

@oschwengers oschwengers self-assigned this Feb 7, 2023
@oschwengers oschwengers added the enhancement New feature or request label Feb 7, 2023
@oschwengers oschwengers added this to the v1.7.0 milestone Feb 7, 2023
@oschwengers oschwengers linked an issue Feb 7, 2023 that may be closed by this pull request
Improve gene symbol annotation of CDS #186
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@oschwengers oschwengers changed the title Improve operon gene alleles #186 Harmonize operon gene alleles #186 Feb 7, 2023
@oschwengers oschwengers merged commit 032bdf1 into main Feb 7, 2023
@oschwengers oschwengers deleted the improve-operon-gene-alleles branch February 7, 2023 15:40
@oschwengers oschwengers changed the title Harmonize operon gene alleles #186 Harmonize operon gene alleles Feb 24, 2023
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Improve gene symbol annotation of CDS
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