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    14 repositories

    • Cascade

      Public
      Calibrated inference of spiking from calcium ΔF/F data using deep networks
      deep-learningcalcium-imagingdeconvolutionspike-detectiontwo-photon
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •31•117•3•0•Updated Sep 19, 2024Sep 19, 2024

    • multiarea_learning_manuscript

      Public
      Multiarea learning manuscript analysis code
      MATLAB
      •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • Centripetal_propagation_astrocytes

      Public
      Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
      calcium-imagingcorrelation-functionsastrocyteshippocampus
      MATLAB
      •
      GNU General Public License v3.0
      •0•7•0•0•Updated May 23, 2024May 23, 2024

    • wilhelm-sych-tmaze-analysis

      Public
      MATLAB
      •1•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • mesostat-dev

      Public
      A library for exploratory analysis of multivariate mesoscopic neuronal signals
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • manual-multisession-alignment

      Public
      A tool for manually track neurons across days
      MATLAB
      •1•1•0•0•Updated Aug 15, 2023Aug 15, 2023

    • contrast-marker-video-tracker

      Public
      MATLAB
      •0•0•14•0•Updated Jul 15, 2022Jul 15, 2022

    • dlc-scripts

      Public
      This library contains scripts for DeepLabCut used for joint and whisker tracking, as well as some auxiliary video processing scripts
      Jupyter Notebook
      •1•0•0•0•Updated Apr 22, 2022Apr 22, 2022

    • CaImAn_DendriteAnalysis

      Public
      Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.
      pythonneurosciencecalcium-imaging
      Jupyter Notebook
      •3•2•0•0•Updated Sep 16, 2019Sep 16, 2019

    • CaImAn_LocomotionAnalysis

      Public
      Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.
      Jupyter Notebook
      •1•1•0•0•Updated Nov 29, 2018Nov 29, 2018

    • blink-detector-ipy3

      Public
      A pipeline designed to process mouse blink videos, extract blink events and collect blinking statistics
      Jupyter Notebook
      •0•0•0•0•Updated Oct 3, 2018Oct 3, 2018

    • CaImAn_legacy

      Public
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated May 16, 2018May 16, 2018

    • HHNE

      Public
      Happy Hifo NWB Editor
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 29, 2017Nov 29, 2017

    • OCIA

      Public
      Calcium Imaging Analysis pipeline with a flexible framework
      MATLAB
      •
      GNU General Public License v3.0
      •3•3•0•0•Updated Nov 9, 2017Nov 9, 2017