ngehlenborg
Follow
Stars
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Notebooks for HuBMAP tutorial session (January 2023)
A declarative interactive genomics visualization library for Python.
Website for a video project that documents the training experiences of predoctoral and postdoctoral trainees from 16 National Library of Medicine-funded biomedical informatics and data science trai…
A list of interesting genome browser or genome-browser-like implementations
Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!
Grammar of Scalable Linked Interactive Nucleotide Graphics
Python API and Jupyter widget for Vitessce
Configurable grammar for visualization components
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Ontology for consent codes and data use requirements
Data portal for the NIH HuBMAP Consortium.
This repo is for the metadata schemas associated with the HCA
A multivariate time series viewer React component.
OncoThreads longitudinal cancer genomics visualization project.
Interactive visualizations for differential expression
The FOIA logs referenced in the Sep. 2, 2017 BuzzFeed News article, "These Scientists Got To See Their Competitors’ Research Through Public Records Requests." https://www.buzzfeed.com/teresalcarey/…
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ …
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
A 3D genome data processing tutorial for ISMB/ECCB 2017
Data Files for the Results of the 2017 Data Visualization Survey