Nextstrain HBV (Hepatitis-B) builds

This repo is currently experimental and the results are not scientifically accurate (most significantly, recombination has not been accounted for). Latest available trees: genotype A, genotype B, genotype C, genotype D, all 11k genomes

Based on Katie Kistler's work in blab/adaptive-evolution

This repository contains two workflows for the analysis of HBV virus data:

• ingest/ - Download data from GenBank, curate metadata, rotate genomes, align and infer genotypes using Nextclade
• phylogenetic/ - Filter sequences, construct phylogeny and export for visualization

Each folder contains a README.md with more information.