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.gitignore
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/
.gitignore
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# Files created by the pipeline, which we want to keep out of git
# (or at least out of _this_ git repo).
benchmarks/
logs/
results/
build/
auspice/
data/
defaults/colors.tsv
defaults/colors_*.tsv
stats.json
# temporary directories useful for local development
scratch/
# used as a separate git workdir for gh-pages branch
/dist/
# Downloaded remote files from sources we expect
/nextstrain-ncov-private/
/nextstrain-data/
/data.nextstrain.org/
# Sensitive environment variables
environment*
# Snakemake state dir
.snakemake
snakemake_log
# Jupyter notebook related
.ipynb_checkpoints/
# Local config overrides
/config_local.yaml
# For Python #
##############
*.pyc
.tox/
.cache/
# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so
# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
Icon?
ehthumbs.db
Thumbs.db
*~
# IDE generated files #
######################
.vscode/
# SLURM log files
slurm-*.out