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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 225 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 47 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 49 5

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 14 1

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 16 4

Repositories

Showing 10 of 233 repositories
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 225 CC-BY-4.0 53 392 (2 issues need help) 30 Updated Sep 19, 2024
  • kghub-downloader Public

    Configuration based file caching downloader

    monarch-initiative/kghub-downloader’s past year of commit activity
    Python 6 0 3 3 Updated Sep 19, 2024
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 12 Apache-2.0 1 27 6 Updated Sep 19, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 14 BSD-3-Clause 4 14 0 Updated Sep 19, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Jupyter Notebook 4 MIT 1 25 1 Updated Sep 19, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Python 7 3 52 6 Updated Sep 18, 2024
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 578 BSD-3-Clause 72 57 7 Updated Sep 18, 2024
  • hpo-web-config Public

    static files for HPO website

    monarch-initiative/hpo-web-config’s past year of commit activity
    0 BSD-3-Clause 4 1 0 Updated Sep 18, 2024
  • malco Public

    Multilingual Analysis of LLMs for Clinical Observations

    monarch-initiative/malco’s past year of commit activity
    Python 3 BSD-3-Clause 0 4 1 Updated Sep 18, 2024
  • monarch-phenologs Public
    monarch-initiative/monarch-phenologs’s past year of commit activity
    Python 2 BSD-3-Clause 0 13 0 Updated Sep 18, 2024
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