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Update README.md (#54)
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milkschen committed Jul 31, 2023
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Expand Up @@ -16,7 +16,7 @@ LevioSAM2 lifts over alignments accurately and efficiently using a chain file.
## Features

- Converting aligned short and long reads records (in SAM/BAM/CRAM format) from one reference to another
- The following alignment features are updated during coversion:
- Comprehensive alignment feature updating during lift-over:
- Reference name (`RNAME`), position (`POS`), alignmant flag (`FLAG`), and CIGAR alignment string (`CIGAR`)
- Mate read information (`RNEXT`, `PNEXT`, `TLEN`)
- (optional) Alignment tags (`MD:Z`, `NM:i`)
Expand Down Expand Up @@ -107,4 +107,4 @@ See [this README](https://github.com/milkschen/leviosam2/blob/main/workflow/READ

_Logo credit: Ting-Wei Young_

_Last update: 3/23/2023_
_Last update: 7/30/2023_

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