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Achievement: StarstruckAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

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Achievement: StarstruckAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

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  • TonsilAtlasCAP Public

    Scripts to document how to get the tonsil atlas dataset ready to upload to the cell annotation platform (CAP)

    HTML 2 Updated Jul 31, 2024

  • HCATonsilData Public

    Provide programmatic access to the tonsil cell atlas datasets

    R 8 2 Other Updated May 2, 2024

  • richter_transformation Public

    Scripts scRNA-seq analysis Richter project

    HTML 4 3 Updated Apr 9, 2024

  • bulk_genomics_2024 Public

    This repository contains a 2024 version of how to run end-end buk genomics / transcriptomics / epigenomics analysis

    Updated Mar 19, 2024

  • SLOcatoR Public

    SLOcatoR is an R package to annotate single-cell transcriptomes and open chromatin profiles from secondary lymphoid organs using the tonsil atlas as reference

    R 3 Other Updated Dec 5, 2023

  • Tbet_in_CLL Public

    TBET expression and activity in tonsillar cells; in the context of a larger project looking at TBET expression in chronic lymphocytic leukemia (CLL)

    HTML Updated May 26, 2023

  • rosalind_problems Public

    My solutions to the bioinformatics problems in rosalind.info

    Python Updated Apr 1, 2023

  • Massomics Public

    Massomics: home of single-cell genomics education

    SCSS 2 Updated Feb 1, 2023

  • code_snippets Public

    A collection of code snippets for different tasks

    R 9 1 Updated Nov 28, 2022

  • sampling_artifacts Public

    Scripts and analysis notebook to reproduce all the scRNA-seq analysis in "Sampling time-dependent artifacts in single-cell genomics studies", published by Massoni-Badosa et al. in Genome Biology (2…

    HTML 8 2 BSD 3-Clause "New" or "Revised" License Updated Nov 9, 2022

  • test Public

    test

    Updated Aug 1, 2022

  • TonsilAtlas Public

    Forked from Single-Cell-Genomics-Group-CNAG-CRG/TonsilAtlas

    Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)

    HTML MIT License Updated Jun 18, 2022

  • depreacted_SLOcatoR Public

    R Other Updated Feb 3, 2022

  • math_teaching Public

    HTML 2 3 Updated Nov 15, 2021

  • TabulaMurisSenisData Public

    Forked from fmicompbio/TabulaMurisSenisData

    data from the TabulaMuris Senis project

    R Other Updated Oct 27, 2021

  • symphony Public

    Forked from immunogenomics/symphony

    Efficient and precise single-cell reference atlas mapping with Symphony

    R GNU General Public License v3.0 Updated Aug 3, 2021

  • tabula_muris_networks Public

    R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)

    HTML 11 2 Updated Jun 30, 2021

  • RICHTER Public

    Jupyter Notebook Updated Sep 9, 2020

  • cellranger_hashing Public

    Scripts to create cellranger calls in scRNA-seq experiments that include cell hashing

    Python 1 Updated Jan 13, 2020

  • cv-1 Public

    Forked from paulasoler/cv

    My Curriculum Vitae

    TeX Updated Jan 3, 2020

  • cluster_scripts Public

    Scripts to run computer-intensive operations in the cluster

    R Updated Sep 27, 2019

  • cellranger Public

    Scripts to create cellranger calls for multiple libraries of a subproject

    Python 2 Updated Sep 26, 2019

  • epid_20 Public

    R Updated Jul 8, 2019

  • FERRER_07 Public

    Updated Jul 5, 2019

  • Python-project Public

    Python 1 Updated Apr 3, 2019

  • SBI-project Public

    Python 2 Updated Apr 3, 2018

  • SBI-project-1 Public

    Forked from wod31/SBI-project

    SBI-Python project , Constructing macromolecular complexes.

    Python Updated Apr 3, 2018