R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)

analysis of phylogenetics and evolution

Miscellany

the Great Tao Package

a helper package for pomp

Some useful Mathematica add-on packages

Supporting code and data for Frontiers MS "Red blood cell dynamics during malaria infection violate the assumptions of mathematical models of infection dynamics"

Supporting code and data for King, Lin, & Ionides (2024) "Exact Phylodynamic Likelihood via Structured Markov Genealogy Processes"

R package for statistical inference using partially observed Markov processes

Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

R package for phylodynamics

A repository of abbreviations for references, e.g., for conferences, journals, institutes, etc.

Graphical Java application for managing BibTeX and biblatex (.bib) databases

Software for maximum likelihood estimation of ARIMA models

The Julia Programming Language

Bayesian Inference of State Space Models

rOpenSci Software Peer Review.

GitHub Actions for the R community

R-hub API client

R package for statistical inference of spatiotemporal partially observed Markov processes

A general-purpose tool for dynamic report generation in R

Generate R package documentation from inline R comments

A Grammar of Animated Graphics

R package for "Epidemics: Models and data using R"

Templates for pandoc, tagged to release

Command-line program to download videos from YouTube.com and other video sites

Beautiful and accessible math in all browsers

Build and check R packages using Travis or other CIs