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repository for denoising diffusion Xe MRI images
A repository that contains non-Cartesian reconstruction software for hyperpolarized xenon MRI.
Gadgetron - Medical Image Reconstruction Framework
The fundamental package for scientific computing with Python.
joeyplum / MoCoLoR
Forked from PulmonaryMRI/MoCoLoRFork of MoCoLoR for pulmonary MRI experiments in neonates and other applications. Fei Tan and the UCSF group are the original owners/creators of this code.
Lightweight Python implementation of Normative Modelling
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
Materials for the "Efficient Forward Models for Image Reconstruction" educational talk at the 2023 ISMRM Annual Meeting.
Motion-compensated low-rank reconstruction for simultaneous structural and functional UTE lung MRI doi: 10.1002/mrm.29703
A Python-embedded modeling language for convex optimization problems.
MRI gradient nonlinearity correction
PhyCV: The First Physics-inspired Computer Vision Library
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
A PyTorch-powered differentiable image reconstruction/optimization toolbox
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code f…
BART: Toolbox for Computational Magnetic Resonance Imaging
Python package to access a cacophony of neuro-imaging file formats
A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
The GPI framework provides the canvas for graphically assembling algorithms.
Module for statistical learning, with a particular emphasis on time-dependent modelling
A repository of useful non-cartesian recon files, with the goal of reconstructing raw Xe MRI data in MATLAB.
A repository containing short examples of statistical analysis within R. This is for teaching purposes only. Primary author: Joseph Plummer.