adding dsh-bio development, wip

README.md

@@ -8,6 +8,7 @@ Docker images of bioinformatics software built with [Linuxbrew](http://brew.sh/l
  * docker pull [heuermh/apache-spark141](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/apache-spark141)
  * docker pull [heuermh/apache-spark131](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/apache-spark131)
  * docker pull [heuermh/apache-spark121](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/apache-spark121)
+ * docker pull [heuermh/dsh-bio-dev](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/dsh-bio-dev)
  * docker pull [heuermh/freebayes](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/freebayes)
  * docker pull [heuermh/nextflow](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/nextflow)
  * docker pull [heuermh/snpeff](https://github.com/heuermh/docker-linuxbrew-bio/tree/master/snpeff)

dsh-bio-dev/Dockerfile

@@ -0,0 +1,17 @@
+FROM sjackman/linuxbrew
+MAINTAINER Michael Heuer <heuermh@acm.org>
+
+USER root
+RUN apt-get update && apt-get install -y \
+  openjdk-7-jdk
+
+USER linuxbrew
+RUN brew install maven
+  && git clone https://github.com/heuermh/dishevelled-bio.git \
+  && cd dishevelled-bio \
+  && mvn package
+
+ENV PATH ~/dishevelled-bio/tools/target/appassembler/bin:$PATH
+
+ENTRYPOINT ["dsh-bio"]
+CMD ["--help"]

dsh-bio-dev/README.md

@@ -0,0 +1,4 @@
+# [dishevelled.org bio](https://github.com/heuermh/dishevelled-bio) development Docker image
+Docker image of [dishevelled.org bio](https://github.com/heuermh/dishevelled-bio) development built with [Linuxbrew](http://brew.sh/linuxbrew/).
+
+ * docker pull [heuermh/dsh-bio-dev](https://registry.hub.docker.com/u/heuermh/dsh-bio-dev/)