Phased assembly variant caller

Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at the Jackson Laboratory.

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Metagenome assembly tutorial, JAX long-read sequencing workshop 2022

Haplotype based scans for selection

A command line tool that draw plots on the terminal.

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

Docker containers for bioinformatics with a small footprint

A curated list of awesome nanopore analysis tools.

R & stats illustrations by @allison_horst

Gene model transfer from closely related reference genomes using cDNA alignments

Integrated Differential Expression and Pathway analysis

Python library to handle Gene Ontology (GO) terms

Area-weighted venn-diagrams for Python/matplotlib