RNA-seq analysis workflow for experiments developed during my doctoral thesis in the Gordon Lab at the University of Iowa (2019-2024).

Citations: Croushore EE, Koppenhafer SL, Goss KL, Geary EL, Gordon DJ. Activator Protein-1 (AP-1) Signaling Inhibits the Growth of Ewing Sarcoma Cells in Response to DNA Replication Stress. Cancer Res Commun. 2023 Aug 17;3(8):1580-1593. doi: 10.1158/2767-9764.CRC-23-0268. PMID: 37599787; PMCID: PMC10434289.

GEO Datasets: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE215881

Modules: Environment modules are used to control the environment setup. https://uiowa.atlassian.net/wiki/x/nICPB

More Information: Documentation for using the Argon cluster can be found at: https://uiowa.atlassian.net/wiki/x/BYCPB