A template for creating modular shiny applications that meet academic standards and are reproducible

an interactive, reproducible, expandible, instructional, and open-source GUI-based app for ecological niche modeling

Machuruku

Scripts for analyzing Illumina-generated environmental DNA sequence data.

Bioinformatic pipeline for processing amplicon data using Dada2.

This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.

Amplicon sequencing analysis workflow using DADA2 and QIIME2

This is a software utility for calculating pooling volumes and graphing quality control data of next generation sequencing (NGS) libraries.

MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.

The Metaprobe: a nimble, low-cost environmental DNA sampler for upscaling marine communities monitoring

Create beautiful Gantt charts with ggplot2

Links for the California Molecular Methods Workgroup SOPs and feedback

Public data and scripts for 2019 hake survey analyses

Aplicación Shiny para el cálculo de posiciones tróficas basado en librería tRophicPosition

Debugging Tools to Inspect the Intermediate Steps of a Call

Surface velocity, object tracking, and river flow measurements in an open-source API

Assign taxonomy with blast, can be used for qiime

Historial de las normas aprobadas por la Convención Constitucional de Chile en 2022

simple and scalable statistical modelling in R

Scripts and data to plot river basins in the United States

eDNA metabarcoding pipeline

Conjunto de funciones para calcular índices y estadísticos climáticos hidrológicos a partir de datos tidy. Incluye una función para graficar resultados georeferenciados y e información cartográfica.

ejercicios de aplicación para temas de ecología y manejo de poblaciones

MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R

Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies

Pipe-friendly Framework for Basic Statistical Tests in R

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

CLI tool for flexible and fast adaptive sampling on ONT sequencers