Making Protein Design accessible to all via Google Colab!

A file server that supports static serving, uploading, searching, accessing control, webdav...

Base Scipion application that is based on pyworkflow and all extension plugins

Base Scipion plugin defining objects and protocols for EM

Underlying pyworkflow module for the Scipion framework

MRBS application code

Contains build scripts and instructions for software on a variety of UK HPC resources

Install and Run Python Applications in Isolated Environments

Run your code in the cloud, with technology so advanced, it feels like magic!

Open Source, Mostly just clicking mouse to finish a simulation with Ambertools and OpenMM. It was designed to use locally but another notebook to finish the simulaiton on Colab was attached as well.

Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

Code for ColabDock paper

PyMuPDF is a high performance Python library for data extraction, analysis, conversion & manipulation of PDF (and other) documents.

Oxford Nanopore's Basecaller

A fast and simple image viewer / editor for many operating systems

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Manage your dotfiles across multiple diverse machines, securely.

qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.

A collection of tools for Hi-C data analysis

The open source part of iVentoy.

a simple wrapper around curl to easily download files

A powerful text editor for MATE

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

A DSL for data-driven computational pipelines

The new home for IcedTea-Web

Commandline interface to start IPMI/OOB KVM interfaces

Source code for JBrowse 2, a modern React-based genome browser

Graphical interface for displaying and interacting with SPIDER format electron microscopy images.