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1. nf-rnaseq nf-rnaseq Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow

2. Filter-A2A-loops-for-active-genes Filter-A2A-loops-for-active-genes Public

   Python

3. nf-atacseq nf-atacseq Public

   Forked from nf-core/atacseq

   ATAC-seq peak-calling and QC analysis pipeline

   Nextflow

4. nf-chipseq nf-chipseq Public

   Forked from nf-core/chipseq

   ChIP-seq peak-calling, QC and differential analysis pipeline.

   Nextflow

5. nf-hic nf-hic Public

   Forked from nf-core/hic

   Analysis of Chromosome Conformation Capture data (Hi-C)

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6. nf-cutandrun nf-cutandrun Public

   Forked from nf-core/cutandrun

   Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

   Nextflow