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A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy.
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DataCurator.jl Public
A scalable Julia package to transparently validate and transform large biomedical datasets using human readable recipes that are translated to machine verifiable templates.
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resources Public
Common resources used in scientific writing
TeX GNU Affero General Public License v3.0 UpdatedSep 13, 2024 -
devs-ex-machina Public
A PDEVS C++ parallel simulator. supporting multiple synchronization paradigms
cpp simulation memory-allocator pdevs discrete-event-simulation optimistic-concurrency conservative-concurrencyC++ European Union Public License 1.1 UpdatedJun 17, 2024 -
Colocalization.jl Public
Colocalization metrics and distances for images or their sparse representations.
Julia GNU Affero General Public License v3.0 UpdatedJun 17, 2024 -
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SPECHT.jl Public
SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy.
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ERGO.jl Public
Object / density detection in astigmatic superresolution dSTORM microscopy
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SmlmTools.jl Public
Computational tools for single molecule localization / superresolution microscopy (point clouds).
tracking julia-language point-cloud alignment superresolution fiducial-marker single-molecule-localizationJulia Other UpdatedAug 29, 2023 -
smlmvis Public
Superresolution visualization of 3D protein localization data from a range of microscopes
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singularity_slurm_cuda Public
Example on how to get started with Singularity and CUDA on a SLURM cluster
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LogParadox.jl Public
Detects sufficient and necessary conditions for pattern inversion conditional on log transform
Julia GNU Affero General Public License v3.0 UpdatedJan 30, 2023 -
labtools Public
Set of utility scripts to ease remote mounting / ssh / data sync etc
Shell GNU General Public License v3.0 UpdatedDec 26, 2022 -
SlurmMonitor.jl Public
A monitor for SLURM HPC schedulers that notifies on preset conditions (downtime, latency) and connects to Slack (optional)
Julia GNU Affero General Public License v3.0 UpdatedNov 7, 2022 -
singularity_julia Public
Template definition file for Singularity RO containers with Julia and user package embedded.
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ERGO Public
ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy
GNU Affero General Public License v3.0 UpdatedAug 8, 2021 -
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clusim Public
Forked from Hoosier-Clusters/clusimAn extended package for clustering similarity
Python MIT License UpdatedJun 23, 2019 -
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bhattacharyya_distance Public
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cedartutorial Public
Tips on how to leverage Compute Canada's HPC (Cedar) in your research.
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 13, 2019 -
launchjobs Public
Python script that runs arbitrary shell commands in parallel (for cluster/SLURM) usage
Jupyter Notebook GNU General Public License v3.0 UpdatedJan 31, 2019 -
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deep_loco Public
Forked from nboyd/deep_locosample implementation of deeploco
Python UpdatedNov 2, 2018 -
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