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A pipeline for the design of mutagenizing oligonucleotides required for Tile Region Exchange Mutagenesis (T-Rex), which is a crucial step for deep mutation scanning (DMS), by harnessing data-optimi…
An R package for analysis and visualization of COVID-19 wastewater viral signal and variant frequency data.
BCB410 term project to create a novel bioinformatics package
An R package for cleanup and analysis of AlphaFold2 predicted structures.
An R package for analysis of gene expression matrix with differential expression analysis, enrichment analysis and correlation analysis.
MissensePathoR is an R package designed to perform pathogenicity analysis of missense variants across the human proteome using AlphaMissense's deep learning predictions, catering to both single var…
Integrating multi-omics data for the exploration of regulatory mechanisms and the inference of core TRNs underlying transcriptomic alterations
DrugSeekR is an R package that analyzes genomic data to identify potential drug targets for personalized medicine through mutational signature analysis, gene and pathway annotation, and drug target…
GPT RStudio addins that enable GPT assisted coding, writing & analysis
R Package to Obtain and Analyze Sex-disaggregated Datasets
An R package for human autosomal copy number variation (CNV) analyses with regards to dosage sensitivity (DS) information of the genes within the CNV regions.
AbunRNA is a package that performs Salmon quantification in R, and visualize expression abundance among wild type and mutants.
VisualSARSDiff is an R package for plotting and comparing Protein-Protein Interactions