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Arteficial discrete trajectories: Calculate Kaplan-Meier estimator #189

Merged
merged 8 commits into from
Nov 7, 2023
Merged

Arteficial discrete trajectories: Calculate Kaplan-Meier estimator #189

merged 8 commits into from
Nov 7, 2023

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andthum
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@andthum andthum commented Nov 7, 2023

Arteficial discrete trajectories: Calculate Kaplan-Meier estimator

Type of change

  • Change of core package.
  • Change of scripts.
  • Bug fix.
  • New feature.
  • Code refactoring.
  • Dependency update.
  • Documentation update.
  • Maintenance.
  • Other: Description.
  • Non-breaking (backward-compatible) change.
  • Breaking (non-backward-compatible) change.

Proposed changes

  • misc/dtrj_lifetimes/compare_dtrj_lifetime_methods.py:
    • Additionally calculate lifetimes from the Kaplan-Meier estimate of the survival function.
    • Calculate first 4 raw moments of the lifetime distribution.
    • Plot the average residual lifetime.
    • Refactor code.
  • misc/dtrj_lifetimes/plot_lifetimes.py: Adapt to the changes in misc/dtrj_lifetimes/compare_dtrj_lifetime_methods.py.

PR checklist

  • I followed the guidelines in the Developer's guide.
  • New/changed code is properly tested.
  • New/changed code is properly documented.
  • The CI workflow is passing.

@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (WIP)
81083d1 
* Additionally calculate lifetimes from the Kaplan-Meier estimate of the
  survival function.
* Calculate first 4 raw moments.
* Refactor code.
@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (WIP)
b4a1b8f 
* Additionally calculate lifetimes from the Kaplan-Meier estimate of the
  survival function.
* Calculate first 4 raw moments.
* Refactor code.
@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (WIP)
20c6b8c 
* Additionally calculate lifetimes from the Kaplan-Meier estimate of the
  survival function.
* Calculate first 4 raw moments.
* Plot the average residual lifetime.
* Refactor code.
@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (WIP)
814a9bd 
* Additionally calculate lifetimes from the Kaplan-Meier estimate of the
  survival function.
* Calculate first 4 raw moments.
* Plot the average residual lifetime.
* Refactor code.
@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (WIP)
882d89d 
* Additionally calculate lifetimes from the Kaplan-Meier estimate of the
  survival function.
* Calculate first 4 raw moments.
* Plot the average residual lifetime.
* Refactor code.
@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (WIP)
36fc017 
* Additionally calculate lifetimes from the Kaplan-Meier estimate of the
  survival function.
* Calculate first 4 raw moments.
* Plot the average residual lifetime.
* Refactor code.
@andthum
[compare_dtrj_lifetime_methods.py]: Include Kaplan-Meier (Done)
15e7e10
@andthum
[plot_lifetimes.py]: Adapt
69609ac 
Adapt the script `plot_lifetimes.py` to the changes in
`compare_dtrj_lifetime_methods.py`.
@github-actions github-actions bot added the maintenance Project maintenance label Nov 7, 2023
@andthum andthum merged commit 87e371b into main Nov 7, 2023
19 checks passed
@andthum andthum deleted the feat/misc/dtrj-lifetimes/include-kaplan-meier branch November 7, 2023 10:03
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