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35 followers · 27 following

Achievements

Achievement: Mars 2020 ContributorAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Mars 2020 ContributorAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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@robotssd @openbiosd @nf-core

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  • cellranger Public

    Python 1 1 GNU Affero General Public License v3.0 Updated Oct 19, 2022

  • basespaceapp Public

    basespaceapp

    Python Updated Jan 21, 2022

  • scanpy-scripts Public

    Forked from ebi-gene-expression-group/scanpy-scripts

    Scripts for using scanpy

    Python Apache License 2.0 Updated Oct 26, 2021

  • methylclock Public

    Forked from isglobal-brge/methylclock

    DNA methylation-based clocks

    C++ MIT License Updated Oct 7, 2021

  • flowStats Public

    Forked from RGLab/flowStats

    flowStats: algorithms for flow cytometry data analysis using BioConductor tools

    R Updated Aug 14, 2021

  • modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow MIT License Updated Aug 6, 2021

  • bcellmagic Public

    Forked from nf-core/airrflow

    B and T cell repertoire sequencing analysis pipeline using the Immcantation framework

    Nextflow MIT License Updated Aug 4, 2021

  • scrnaseq Public

    Forked from nf-core/scrnaseq

    A single-cell RNAseq pipeline for 10X genomics data

    Nextflow MIT License Updated Jul 27, 2021

  • fetchngs Public

    Forked from nf-core/fetchngs

    Pipeline to fetch metadata and raw FastQ files from public databases

    Groovy MIT License Updated Jul 22, 2021

  • eido Public

    Forked from pepkit/eido

    Validator for PEP objects

    Jupyter Notebook BSD 2-Clause "Simplified" License Updated Jul 9, 2021

  • DunedinPoAm38 Public

    Forked from danbelsky/DunedinPoAm38

    R package to implement DunedinPoAm38 in Illumina EPIC and 450k array data

    R GNU General Public License v2.0 Updated May 8, 2020

  • rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

    Nextflow MIT License Updated Jan 28, 2020

  • racon Public

    Forked from isovic/racon

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116

    C++ MIT License Updated May 29, 2018

  • NGI-ChIPseq Public

    Forked from nf-core/chipseq

    Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

    Groovy MIT License Updated Jan 19, 2018

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell Updated Jan 8, 2018

  • SCI-F Public

    Forked from bauerm97/SCI-F

    Standard Container Integration Format

    BSD 3-Clause "New" or "Revised" License Updated Nov 22, 2017

  • apps Public

    Forked from sci-f/apps

    Modular (SCI-F) apps for Singularity containers

    CSS BSD 3-Clause "New" or "Revised" License Updated Nov 15, 2017

  • singularityware.github.io Public

    Forked from singularityware/singularityware.github.io

    base documentation site for Singularity software

    JavaScript Updated Oct 30, 2017

  • singularityhub.github.io Public

    Forked from singularityhub/singularityhub.github.io

    redirect to main http://www.singularity-hub.org site

    HTML Updated Oct 14, 2017

  • scbatch Public

    A containerized collection of single cell sequencing batch effects correction algorithms

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Sep 18, 2017

  • f-scLVM Public

    Forked from bioFAM/slalom
    Jupyter Notebook Apache License 2.0 Updated Aug 24, 2017

  • alaindomissy.github.io Public

    Updated Aug 14, 2017

  • toil Public

    Forked from DataBiosphere/toil

    A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

    Python Other Updated Aug 3, 2017

  • hello-world Public

    Forked from vsoch/hello-world

    testing container for pushing to singularity-hub

    Shell MIT License Updated Aug 3, 2017

  • toil-vg Public

    Forked from vgteam/toil-vg

    Distributed and cloud computing framework for vg

    Python Apache License 2.0 Updated Aug 2, 2017

  • lolcow-selfinstalled Public

    Shell Updated Jul 26, 2017

  • lonnberg_svensson2017 Public

    Forked from olgabot/lonnberg_svensson2017

    Expression data for Lönnberg + Svensson et al, "Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria," Science Immunology (20…

    Roff MIT License Updated Jul 10, 2017

  • friendlyhello Public

    Python Updated Jul 3, 2017

  • affero Public

    GNU Affero General Public License v3.0 Updated Jul 3, 2017

  • toil-rnaseq-sc Public

    Forked from BD2KGenomics/toil-rnaseq-sc

    Toil-based RNA-seq pipeline for processing single-cell data

    Python Apache License 2.0 Updated Jun 22, 2017