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Commits on Aug 2, 2017

• add -se to single-ended names for r plots

  glennhickey

  committedAug 2, 2017
  165928e

Commits on Aug 1, 2017

• update vg docker image

  glennhickey

  committedAug 1, 2017
  d9c278a

• update bcftools and tabix docker containers to be same

  glennhickey

  committedAug 1, 2017
  2294c08

Commits on Jul 27, 2017

• Let us know which realigned GAM is which when dumping them.

  adamnovak

  committedJul 27, 2017
  bf5492b

Commits on Jul 26, 2017

• add R docker container

  glennhickey

  committedJul 26, 2017
  2f1c51e

Commits on Jul 24, 2017

• Merge pull request vgteam#268 from adamnovak/simscore

  adamnovak

  committedJul 24, 2017
  7f6a522

Commits on Jul 21, 2017

• Move mapping options

  adamnovak

  committedJul 21, 2017
  ff8116f

• Spit out different score stats files per graph compared against

  adamnovak

  committedJul 21, 2017
  1860c59

• Add more constraints

  adamnovak

  committedJul 21, 2017
  447c934

• Compare scores against the input scores as well as a specified baseline graph

  adamnovak

  committedJul 21, 2017
  9de5242

• Break out annotation into its own job

  adamnovak

  committedJul 21, 2017
  9784bd9

• add sim option to use different xg for annotation

  glennhickey

  committedJul 21, 2017
  5b98dd7

• add hacky toil_call to vg_common for vgci. hopefully temporary

  glennhickey

  committedJul 21, 2017
  d3d676f

• Merge pull request vgteam#266 from adamnovak/refactor

  adamnovak

  committedJul 21, 2017
  1ca76ef

• support gpbwt from vcf in toil-vg index

  glennhickey

  committedJul 21, 2017
  bfcb522

Commits on Jul 20, 2017

• Trim back options more in mapeval after Glenn's refactoring

  adamnovak

  committedJul 20, 2017
  1d9bc6a

• Accept multiple input indexes in vg sim

  glennhickey

  committedJul 20, 2017
  578d249

• use context instead of options in toil-vg sim

  glennhickey

  committedJul 20, 2017
  47bf5bd

• switch toil-vg map to use context instead of options

  glennhickey

  committedJul 20, 2017
  42c801d

Commits on Jul 19, 2017

• Merge pull request vgteam#260 from glennhickey/issues/167-toil-autoscaling

  glennhickey

  committedJul 19, 2017
  b25851b

• Merge pull request vgteam#259 from glennhickey/options_cleanup

  glennhickey

  committedJul 19, 2017
  c40fe20

• Dont pass xg index to chunking jobs

  glennhickey

  committedJul 19, 2017
  33b2922

• switch toil-vg index over to context options

  glennhickey

  committedJul 19, 2017
  86f5143

• update vg docker

  glennhickey

  committedJul 19, 2017
  8d8c2e1

Commits on Jul 17, 2017

• Remove unused options argument from much of vg_mapeval

  adamnovak

  committedJul 17, 2017
  7081a18

Commits on Jul 14, 2017

• Merge pull request vgteam#247 from adamnovak/refactor

  adamnovak

  committedJul 14, 2017
  7ad7533

• Don't spam docker version output

  adamnovak

  committedJul 14, 2017
  135d7ae

• Fixed singularity exec bind directory

  cmarkello

  committedJul 14, 2017
  8e24681

• Update outdated comment

  adamnovak

  committedJul 14, 2017
  a3a2fa1

• Stop unique-ifying BAM/GAM names in output files

  adamnovak

  committedJul 14, 2017
  901b3b4

• Add some extra options that lower-level code demands

  adamnovak

  committedJul 14, 2017
  989a2c7

• Add truth argument as required

  adamnovak

  committedJul 14, 2017
  6465e3a

• Expose default options

  adamnovak

  committedJul 14, 2017
  4584a12

• Finish refactoring mapeval not to use options to pass stuff all around

  adamnovak

  committedJul 14, 2017
  e905321

• Move over to a plan system and have Context produce Toil instances

  adamnovak

  committedJul 14, 2017
  d2484a6

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