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Johns Hopkins University
- http://aabiddanda.github.io/
- @aabiddanda
Highlights
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snakemake_demo Public
Demo repo for new cluster setup with snakemake (excludes configs)
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smcpp_bootstrap Public
Pipeline for running SMC++ on WGS data.
Python MIT License UpdatedJan 30, 2024 -
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comp_bio_demo_2024 Public
Demo for skype a scientist activity 2024
Jupyter Notebook UpdatedJan 24, 2024 -
AmpliCoNE-tool Public
Forked from makovalab-psu/AmpliCoNE-toolAmpliCoNE: Ampliconic Copy Number Estimator
Python UpdatedOct 10, 2023 -
xsmc Public
Forked from terhorst/xsmcExact decoding of the sequentially Markov coalescent.
Jupyter Notebook UpdatedSep 8, 2023 -
geosfs_empirical Public
Obtaining annotated SFS from publicly available datasets across multiple populations
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stdpopsim Public
Forked from popsim-consortium/stdpopsimA library of standard population genetic models
Python GNU General Public License v3.0 UpdatedJun 10, 2023 -
tszip Public
Forked from tskit-dev/tszipGzip-like compression for tskit tree sequences
Python MIT License UpdatedJun 10, 2023 -
demes-python Public
Forked from popsim-consortium/demes-pythonTools for describing and manipulating demographic models.
Python ISC License UpdatedJun 10, 2023 -
poibin Public
Forked from tsakim/poibinPoisson Binomial Probability Distribution for Python
Python MIT License UpdatedMay 2, 2023 -
makeScaffold Public
Forked from odelaneau/makeScaffoldBuild a haplotype scaffold for a VCF/BCF from a PED file
C++ MIT License UpdatedApr 19, 2023 -
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Investigating deviations from the Coalescent in the Moran Model
Python UpdatedJan 31, 2022 -
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emeraLD Public
Forked from statgen/emeraLDtools to efficiently retrieve and calculate LD
C++ UpdatedSep 3, 2021 -
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sublinear-Li-Stephens Public
Forked from yoheirosen/sublinear-Li-StephensCalculates the probability of a haplotype given a population reference panel
C++ UpdatedJan 22, 2021 -
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geovar_rep_paper Public
Repository to replicate results from the GeoVar paper
Python GNU General Public License v3.0 UpdatedDec 3, 2020 -
project_template Public
Template for project directories to make sure code is standardized
Jupyter Notebook UpdatedNov 4, 2020