Deterministic Bayesian Sparse Linear Mixed Model

Medical Segmentation Decathlon 2018

Configs and descriptions of circos plots created on FUMA web application

Genome data visualizations

Pipelines for the analysis of 10x single-cell RNA-sequencing data

Utilities for downloading and managing protein FASTA files.

Official code repository for GATK versions 4 and up

Battenberg R package for subclonal copynumber estimation

Basic docker image for ad-hoc genomic analyses

The "copynumber" R package with support for hg38

Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec

Copy number variant caller and depth visualization utility for PacBio HiFi reads

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

Bioinformatics tools and snippets

annotates VCF samples with denovo and possible compound flags and matching inheritance modes

A program to detect denovo-variants using next-generation sequencing data.

DeNovoGear Docker container

corrplot of LDSC genetic correlation results

Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis

Various Singularity recipes I've used to generate containers

Population-scale genotyping using pangenome graphs

Tandem repeat genotyping and visualization from PacBio HiFi data

Query UKB-PPP data