GitHub - WillieTaylor/simgen: simgen code and examples

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
ATPase		ATPase
CBACpaper		CBACpaper
bump3chy		bump3chy
code1save		code1save
code2save		code2save
code3save		code3save
code5save		code5save
code6save		code6save
crash		crash
doc		doc
fixRNAtest		fixRNAtest
flag		flag
nucleo		nucleo
rhod		rhod
secycle		secycle
setsec		setsec
simRNA		simRNA
testAlpha		testAlpha
testFreeze		testFreeze
testHinge		testHinge
Makefile		Makefile
Makefile.gdb		Makefile.gdb
Makefile.gprof		Makefile.gprof
Makefile.opt		Makefile.opt
Makefile.remote		Makefile.remote
Mat.hpp		Mat.hpp
README		README
Seg.hpp		Seg.hpp
Vec.hpp		Vec.hpp
bumper.cpp		bumper.cpp
bumper.o		bumper.o
cell.cpp		cell.cpp
cell.hold		cell.hold
cell.hpp		cell.hpp
cell.o		cell.o
data.cpp		data.cpp
data.hpp		data.hpp
data.o		data.o
driver.cpp		driver.cpp
driver.o		driver.o
fixers.check		fixers.check
fixers.cpp		fixers.cpp
fixers.hold		fixers.hold
fixers.o		fixers.o
fixers.save		fixers.save
geom.cpp		geom.cpp
geom.hpp		geom.hpp
geom.o		geom.o
keeper.cpp		keeper.cpp
keeper.o		keeper.o
linker.cpp		linker.cpp
linker.hold		linker.hold
linker.o		linker.o
looker.o		looker.o
main.cpp		main.cpp
main.more.c		main.more.c
minder.o		minder.o
models.cpp		models.cpp
models.hold		models.hold
models.o		models.o
params.cpp		params.cpp
params.o		params.o
potter.cpp		potter.cpp
potter.o		potter.o
setsec.tar.gz		setsec.tar.gz
shaker.cpp		shaker.cpp
shaker.o		shaker.o
simgen		simgen
sims		sims
sorter.cpp		sorter.cpp
sorter.o		sorter.o
super.ras		super.ras
util.cpp		util.cpp
util.h		util.h
util.hpp		util.hpp
util.o		util.o
viewer.cpp		viewer.cpp
viewer.o		viewer.o

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All files required to make simgen are contained in this directory.
The default driver (and its helpers) is an empty C++ shell and it 
is recommended that customised driver routines are created in separate 
directories elsewhere.

The user manual is in the sub-directory doc and the API is specified
as comments in the utility files: cell.hpp  data.hpp  geom.hpp  Mat.hpp  
Seg.hpp  util.hpp  Vec.hpp

Most test application directories have informative names and in each
there is usually a tcsh script to run the program otherwise try:
simgen somefile.run 

NB: I forgot to mention the interactive controls. JKL = rot.XYZ and XYZ
for translation. (Z trans = zoom). Each is reversed in lower-case. For 
rotation, these are velocity increments and Q sets them back to zero.  
ESC = quit.