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Commits on Apr 24, 2018

• Nextflow, not groovy.

  ewels

  committedApr 24, 2018
  485fc29

• NGI-ChIPseq > nf-core/ChIPseq

  ewels

  committedApr 24, 2018
  4f35e62

Commits on Jan 19, 2018

• Small change about the --gtf option

  chuan-wang

  committedJan 19, 2018
  50e1799

Commits on Jan 18, 2018

• Add specifications about the --gtf option

  chuan-wang

  committedJan 18, 2018
  3821967

Commits on Dec 4, 2017

• Make primary alignment filtering as default option

  chuan-wang

  committedDec 4, 2017
  3871518

Commits on Dec 1, 2017

• Adding primary alignment filtering; Adding new plotting functions in deepTools

  chuan-wang

  committedDec 1, 2017
  23cc680

Commits on Nov 24, 2017

• Use Singularity instead of environment modules

  ewels

  committedNov 24, 2017
  c29361b

Commits on Nov 14, 2017

• Revise software versions reporting method

  chuan-wang

  committedNov 14, 2017
  942dfe5

Commits on Nov 8, 2017

• Improving the method of handling blacklist

  chuan-wang

  committedNov 8, 2017
  2b87465

Commits on Nov 7, 2017

• v1.4 Updates: Adding post peak calling filtering and annotations; Generating coverage bw file in deepTools

  chuan-wang

  committedNov 7, 2017
  97016ed

Commits on Jul 5, 2017

• Updated e-mail code. Proper multipart, fixed HTML version, option for plaintext.

  ewels

  committedJul 5, 2017
  67a638c

Commits on Jun 28, 2017

• Added docs about -resume.

  ewels

  committedJun 28, 2017
  3abe7d0

Commits on Jun 14, 2017

• Small clarifications about the --broad flag

  chuan-wang

  committedJun 14, 2017
  f9c0740

• Add --broad option for MACS

  chuan-wang

  committedJun 14, 2017
  4129659

• Minor docs tweak

  ewels

  committedJun 14, 2017
  6a5b7bc

Commits on Jun 12, 2017

• Fixed copy+paste typos. Added docs about --fasta.

  ewels

  committedJun 12, 2017
  3d959f7

• Added more config profiles. Beefed up documentation.

  ewels

  committedJun 12, 2017
  7cf9129

Commits on Mar 23, 2017

• Small format change

  chuan-wang

  committedMar 23, 2017
  7dd9cd4

• Add more specifications about MACS output files

  chuan-wang

  committedMar 23, 2017
  cc52b69

Commits on Mar 21, 2017

• Fix the NGI logo file

  chuan-wang

  committedMar 21, 2017
  8ddc24a

• Add specifications of pipeline output

  chuan-wang

  committedMar 21, 2017
  ccfc41b

Commits on Mar 20, 2017

• Config updates, readme updates. More explicit params, better checks.

  ewels

  committedMar 20, 2017
  e0ec61e

Commits on Nov 7, 2016

• Pipeline refactor.

  ewels

  committedNov 7, 2016
  18c72c6

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