Pandas deprecated parameter fix

The inplace=True keyword was removed from newer Pandas versions, thus the inplace option is replaced by re-assigning the variable, following Pandas recs (pandas-dev/pandas#57104) Changing df['popInd'].cat.set_categories(sim.net.pops.keys(), inplace=True) by df['popInd'] = df['popInd'].cat.set_categories(sim.net.pops.keys()) in analysis/spikes.py
RomanB22 · Mar 27, 2024 · b35b841 · b35b841
1 parent a7c06ec
commit b35b841
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/netpyne/analysis/spikes.py b/netpyne/analysis/spikes.py
@@ -83,15 +83,15 @@ def prepareSpikeData(
             orderBy = 'gid'
         elif orderBy == 'pop':
             df['popInd'] = df['pop'].astype('category')
-            df['popInd'].cat.set_categories(sim.net.pops.keys(), inplace=True)
+            df['popInd'] = df['popInd'].cat.set_categories(sim.net.pops.keys())
             orderBy = 'popInd'
         elif isinstance(orderBy, basestring) and not isinstance(cells[0]['tags'][orderBy], Number):
             orderBy = 'gid'
 
         if isinstance(orderBy, list):
             if 'pop' in orderBy:
                 df['popInd'] = df['pop'].astype('category')
-                df['popInd'].cat.set_categories(sim.net.pops.keys(), inplace=True)
+                df['popInd'] = df['popInd'].cat.set_categories(sim.net.pops.keys())
                 orderBy[orderBy.index('pop')] = 'popInd'
             keep = keep + list(set(orderBy) - set(keep))
         elif orderBy not in keep: