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Read-Lab-Confederation

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  1. nyc-subway-anthrax-study nyc-subway-anthrax-study Public

    Searching for anthrax in the New York City subway metagenome.

    Shell 3 2

  2. papista-genome-sequencing papista-genome-sequencing Public

    Whole genome sequencing of Pandoraea apista using Oxford Nanopore MinION

    Shell 2 2

  3. staph_metagenome_subtypes staph_metagenome_subtypes Public

    HTML 1 2

  4. supernova-16s supernova-16s Public

    Analysis of the Supernova 16S data set.

    HTML 1

  5. MRSA_bloodstream_clusters MRSA_bloodstream_clusters Public

    2018-2019 Genomic Clusters of bacteremia associated with MRSA

    1

  6. Neisseria_gonorrhoea_Population_Study Neisseria_gonorrhoea_Population_Study Public

    Python

Repositories

Showing 10 of 19 repositories
  • lab_hackathon2 Public

    Our project is to adapt Brooke's script for determining AMR reads per million from meta genomic data

    Read-Lab-Confederation/lab_hackathon2’s past year of commit activity
    Python 0 MIT 0 1 0 Updated May 13, 2024
  • read-lab-confederation.github.io Public

    EMERGENT - EMory bactERial GEnomics aNd meTagenomics

    Read-Lab-Confederation/read-lab-confederation.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Feb 19, 2024
  • github-collab-practice Public

    For practicing github commands with collaborators

    Read-Lab-Confederation/github-collab-practice’s past year of commit activity
    0 0 0 0 Updated Jun 29, 2023
  • emergent-metagenome-pipeline Public

    A pipeline written in nextflow for processing metagenomes and identifying sequences within metagenomes

    Read-Lab-Confederation/emergent-metagenome-pipeline’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 21, 2023
  • antibiograms Public

    Data and script for parsing BioSample antibiogram data

    Read-Lab-Confederation/antibiograms’s past year of commit activity
    0 CC0-1.0 0 0 0 Updated May 8, 2023
  • Ct_MAP_analysis Public
    Read-Lab-Confederation/Ct_MAP_analysis’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 22, 2023
  • panplots Public Forked from SioStef/panplots

    A small R script for generating pangenome accumulation curves

    Read-Lab-Confederation/panplots’s past year of commit activity
    R 0 2 0 0 Updated Apr 2, 2022
  • hAMRoaster Public Forked from ewissel/hAMRoaster

    hAMRoaster is an analysis pipeline that can compare the output of nine different tools for detecting AMR genes and provide metrics of their performance

    Read-Lab-Confederation/hAMRoaster’s past year of commit activity
    Python 0 CC0-1.0 3 0 0 Updated Feb 9, 2022
  • MRSA_bloodstream_clusters Public

    2018-2019 Genomic Clusters of bacteremia associated with MRSA

    Read-Lab-Confederation/MRSA_bloodstream_clusters’s past year of commit activity
    1 0 0 0 Updated Dec 23, 2021
  • Saureus_short_seq_database Public

    Creating fasta file for the database of short DNA sequences from S. aureus publications https://docs.google.com/spreadsheets/d/1-8TOA2eY1j5h5frcOCiKiCoTMN0JCwU3sVijJ-GvHSc/edit?usp=sharing

    Read-Lab-Confederation/Saureus_short_seq_database’s past year of commit activity
    R 0 0 0 0 Updated Mar 19, 2021
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