29 Pull requests merged by 13 people

• Fix RandomWeightedCrop for Integer Weightmap Handling

  #8097 merged Sep 20, 2024

• Fix link in test bundle under MONAI-extra-test-data

  #8092 merged Sep 18, 2024

• BUG: fixed wrong space directions interpretation in nrrd reader

  #8091 merged Sep 18, 2024

• move publish to test pypi

  #8086 merged Sep 16, 2024

• Remove deprecated args and class for v1.4

  #8079 merged Sep 16, 2024

• Fix FileNotFoundError when download bundle

  #8076 merged Sep 10, 2024

• Fix generalized dice computation

  #7970 merged Sep 7, 2024

• Suppress deprecated warning when import monai

  #8067 merged Sep 6, 2024

• Make MetaTensor optional printed in DataStats and DataStatsd #5905

  #7814 merged Sep 4, 2024

• Allow ApplyTransformToPointsd receive a sequence of refer keys

  #8063 merged Sep 4, 2024

• Trt compiler fixes

  #8064 merged Sep 4, 2024

• Forced Fourier class to output contiguous tensors.

  #7969 merged Sep 3, 2024

• Ignore warning from nptyping as workaround

  #8062 merged Sep 2, 2024

• Add deterministic support for RandSimulateLowResolutiond

  #8057 merged Sep 2, 2024

• Fix vista3d transpose bug

  #8059 merged Sep 2, 2024

• Add box and points convert transform

  #8053 merged Sep 2, 2024

• Added TRTWrapper

  #7990 merged Sep 1, 2024

• Update base image to 2408

  #8049 merged Aug 31, 2024

• Added docstring to address 'Scaling of RandImageFilterd transform #6857'

  #8055 merged Aug 31, 2024

• Ensure synchronization by adding cuda.synchronize()

  #8058 merged Aug 30, 2024

• Use torch_tensorrt.Device instead of torch.device in trt compile

  #8051 merged Aug 29, 2024

• Image space and World Space convert transforms

  #7942 merged Aug 29, 2024

• Add a mapping function in transforms.io

  #7769 merged Aug 28, 2024

• Fix transpose and patch coords bug

  #8047 merged Aug 28, 2024

• Monthly downloads badge added

  #7891 merged Aug 26, 2024

• Add vista3d inferers

  #8021 merged Aug 26, 2024

• Refactor Export for Model Conversion and Saving

  #7934 merged Aug 23, 2024

• Fix AttributeError when using torch.min and max

  #8041 merged Aug 23, 2024

• 8029 update load old weights function for diffusion_model_unet.py

  #8031 merged Aug 20, 2024

2 Pull requests opened by 1 person

• Add Average Precision to metrics

  #8089 opened Sep 17, 2024

• Add R2 score to metrics

  #8093 opened Sep 18, 2024

23 Issues closed by 5 people

• RandomWeightedCrop doesn't randomly generate crops for a weightmap of integers

  #7949 closed Sep 20, 2024

• Hi @benolmbrt, thanks for your reporting.

  #8098 closed Sep 20, 2024

• FileNotFoundError when download bundle

  #8075 closed Sep 10, 2024

• Obtain the feature map from the last layer of the UNet network

  #8071 closed Sep 7, 2024

• `GeneralizedDiceScore` reductions do not work as expected

  #7966 closed Sep 7, 2024

• OptionalImportError in test_trt_compile

  #8066 closed Sep 7, 2024

• Metadata "Space" Is Always "RAS"

  #8069 closed Sep 6, 2024

• verbose DataStats for metatensor

  #5905 closed Sep 4, 2024

• test_trt_compile test error in pytorch 23.08

  #8061 closed Sep 4, 2024

• determinism (seeding) not working for transform RandSimulateLowResolutiond

  #7911 closed Sep 2, 2024

• Update base image to 24.08

  #8048 closed Aug 31, 2024

• Scaling of RandImageFilterd transform

  #6857 closed Aug 31, 2024

• Cuda sync issue after update base image

  #8054 closed Aug 30, 2024

• AttributeError: 'torch.device' object has no attribute 'gpu_id'

  #8050 closed Aug 29, 2024

• Update the SaveImage transform to support saving input-output mapping.

  #7557 closed Aug 28, 2024

• Indexing not working as expected

  #8046 closed Aug 27, 2024

• SwinUNETR CUDA out of memory on NVIDIA RTX 4070

  #8042 closed Aug 25, 2024

• Make the _export function support saver input

  #6375 closed Aug 23, 2024

• AttributeError: 'torch.return_types.max' object has no attribute 'shape'"

  #8040 closed Aug 23, 2024

• how to add a sigmoid activation to the last layer of the monai.networks.nets.UNet architecture for deep learning applications？

  #8038 closed Aug 22, 2024

• Increased GPU memory for SurfaceDistanceMetric calculation

  #7954 closed Aug 21, 2024

• Layer norm not working in densenet

  #7293 closed Aug 21, 2024

• `load_old_state_dict` of `DiffusionModelUNet` is wrong

  #8029 closed Aug 20, 2024

10 Issues opened by 8 people

• MMD's `y_mapping` is not convenient

  #8095 opened Sep 19, 2024

• Jaccard, Dice and Tversky losses are incompatible with soft labels

  #8094 opened Sep 18, 2024

• Recursion Error when setting DataLoader Random Seed with Hydra configuration

  #8087 opened Sep 17, 2024

• Add Average Precision and R2 to the metrics

  #8085 opened Sep 16, 2024

• ThreadDataLoader with multiple thread worker ruins RandCropByPosNegLabeld

  #8080 opened Sep 11, 2024

• DeprecationWarning when import monai

  #8060 opened Sep 2, 2024

• racing condition when InvertD is used along with ThreadDataLoader

  #8056 opened Aug 30, 2024

• No files generated by monai auto 3d seg during infrence

  #8045 opened Aug 27, 2024

• Adding syntax for the json config files to actually merge, not override, entries

  #8044 opened Aug 26, 2024

• AssertionError in TestSURELoss

  #8036 opened Aug 21, 2024

17 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• Add MedNext implementation

  #8004 commented on Sep 11, 2024 • 7 new comments

• Print what package should be installed when suitable writer is missing

  #8001 commented on Aug 26, 2024 • 0 new comments

• Fix randomness for threading

  #7925 commented on Sep 16, 2024 • 0 new comments

• Modify _log_input_summary function

  #7811 commented on Sep 19, 2024 • 0 new comments

• Feature added: Get WSI at mpp

  #7574 commented on Sep 16, 2024 • 0 new comments

• Add option to skip resizing for RestoreLabeld Transform

  #6380 commented on Sep 18, 2024 • 0 new comments

• adding SegFormer3D to the MONAI list of architectures

  #7689 commented on Sep 17, 2024 • 0 new comments

• Differentiate between model output and postprocessing output

  #6724 commented on Sep 10, 2024 • 0 new comments

• Pathology HoVerNet: Build the WSI inference pipeline

  #4883 commented on Sep 10, 2024 • 0 new comments

• RandWeightedCropd in batch

  #7851 commented on Sep 4, 2024 • 0 new comments

• metatensor einops rearrange

  #6397 commented on Sep 3, 2024 • 0 new comments

• Enable relative positional embedding in flash attention

  #7997 commented on Aug 31, 2024 • 0 new comments

• Is there a way to combine Test-Time Augmentation (TTA) with sliding window inference?

  #8032 commented on Aug 27, 2024 • 0 new comments

• ShuffleBuffer not returning all patches

  #7986 commented on Aug 26, 2024 • 0 new comments

• Define categories for the MONAI bundle properties

  #7904 commented on Aug 23, 2024 • 0 new comments

• can't use TrainableBilateralFilter for 3d image

  #7444 commented on Aug 23, 2024 • 0 new comments

• Proposal: TRT Acceleration API improvement

  #8018 commented on Aug 22, 2024 • 0 new comments