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1. FASconCAT-G FASconCAT-G Public

   FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. Th…

   Perl 33 20

2. FASconCAT FASconCAT Public

   FASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly…

   Perl 6 7

3. BaCoCa BaCoCa Public

   BaCoCa (Base Composition Calculator) is designed to perform multiple statistical analyses on multiple nucleotide and amino-acid sequence alignments. The results of the BaCoCa analyses can be used f…

   2 4

4. AliGROOVE AliGROOVE Public

   AliGROOVE, a new tool to visualize the extent of sequence similarity and alignment ambiguity in pairwise sequence comparisons de- rived from a multiple sequence alignment. AliGROOVE can help to det…

   2 2

5. Penguin Penguin Public

   PENGUIN, a Perl script designed to perform site pattern analyses for quartets of aligned nucleotide and amino acid sequences using observed and expected split-supporting site-patterns by considerat…

   1

6. AliCUT AliCUT Public

   A nice tool to cut out ALISCORE identified randomized sequence sections in multiple sequence alignments.

   Perl 1 3