身份证翻译模板

Pipeline for Universal Mapping of ATAC-seq

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

Single-cell epigenomics analysis tools

Transcript assembly and quantification for RNA-Seq

Graph-based alignment (Hierarchical Graph FM index)

A method to analyse the DMRs of genome of mammals

A script which can use the bismark tool automatically to process the genome files, and analysis the fastaq files generated by methylome sequencing

An Autonomous LLM Agent for Complex Task Solving

A script which can use the trim_galore tool automatically to trim the ataptors of the fastq files. Help us filter the data easily!

Web application to explore the Sequence Read Archive.

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Learning materials, files and codes for bioinformatics

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media