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Facilitate the linkage of OMOP CDM databases from different sources
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Updated Sep 27, 2023
A tool (and pre-commit hook) to automatically upgrade syntax for newer versions of the language.
We feature a project or marimo notebook from the community every Thursday!
Altair Ally is a companion package to Altair, which provides a few shortcuts to create common plots for exploratory data analysis.
A selection of statistical graphics for vega in python, based on altair.
Wrapper Functions to query RxNorm
Small tool to query rxnorm and snomed REST API's
Data integration suite including mapping definitions for conversion of source data for pilots to AICCELERATE common data model
Winners of the SNOMED CT Entity Linking Challenge
Open drug data pipelines curated by pharmacists.
MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases
[ICLR'24] Enhancing Healthcare Predictions with Personalized Knowledge Graphs
Python library to help with making data FAIR
This project contains the source code and data mapping and dictionary files for the AIREADI MoCA and Labs ETL process.
Fuzzy matching and more functionality for spaCy.
A reasonable Python interface for the UMLS Metathesaurus REST API
A project focusing on applying machine learning principles to ICU data to help guide treatment decisions, outcome prediction, and other data-driven processes. Based on data from MIMIC III database …
A full spaCy pipeline and models for scientific/biomedical documents.
Scalable SNOMED CT Terminology Server using Elasticsearch
OCL Terminology Service v2 in python/django