Highlights
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Notebooks used in scvi-tools tutorials
Implement AlphaZero/AlphaGo Zero methods on Chinese chess.
Comparison of methods for trajectory inference on single-cell data 🥇
A Deep Learning UCI-Chess Variant Engine written in C++ & Python 🦜
Data and software for building the ACL Anthology.
PainterEngine is a application/game engine with software renderer,PainterEngine can be transplanted to any platform that supports C
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Just use pyecharts to imitate Echarts official example.
A Unified and Modular Framework to Incorporate Structural Dependency in Spatial Omics Data
Fast and memory-efficient exact attention
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics
Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬
an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data
zhanglabtools / STAligner
Forked from zhoux85/STAlignerSTAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
Cell clustering for spatial transcriptomics data with graph neural network