Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

Code used to generate a dataset quantifying multi-drug use in 80 million patients' prescription drugs claims

This repository contains data and other materials related to the DeepPT manuscript

The R code for Machine Learning Based on Blood Test Biomarkers Predicts Fast Progression in Advanced NSCLC Patients Treated with Immunotherapy

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

Code to reproduce the analyses of "Automated quantification of Barrett's esophagus from non-endoscopic device predicts Barrett's segment length" by Berman et al.

Quantifying copy number signatures from absolute copy number profiles

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Transposable element databases

Quantification of transposable element expression using RNA-seq

Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)

R package for an introduction to transkingdom network analysis

Extra learners for use in mlr3.

Survival analysis built on top of scikit-learn

Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

PREP: Prioritizing of RNA Editing-based Peptides

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

Characterization of Germline variants

Repository for all the labs for Spring 2021

Repository for all the labs for Spring 2021

List of software/websites/databases/other stuff for genome engineering

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

TRUST4 manuscript evaluation

Mollecular Functional Portraits