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Commits on Feb 13, 2023

• restore improved IS transposase extraction oschwengers#10

  oschwengers

  committedFeb 13, 2023
  fd6520c

• swap swissprot download link to Expasy

  oschwengers

  committedFeb 13, 2023
  65c4b66

• swap uniparc download link to Expasy

  oschwengers

  committedFeb 13, 2023
  70c8aa6

Commits on Feb 11, 2023

• update doric10 download link

  oschwengers

  committedFeb 11, 2023
  2bf405a

Commits on Feb 10, 2023

• update db build script to new number of NCBI NRP data files

  oschwengers

  committedFeb 10, 2023
  c3e709d

• amend tRNA gene symbols oschwengers#192

  oschwengers

  committedFeb 10, 2023
  cd752a4

• amend rRNA gene symbols oschwengers#192

  oschwengers

  committedFeb 10, 2023
  1f02205

• bump BioPython dependency to 1.80

  oschwengers

  committedFeb 10, 2023
  e3ba542

• replace deprecated BioPython GC method by gc_fraction

  oschwengers

  committedFeb 10, 2023
  52efd9d

• amend & expand rRNA dbxrefs

  oschwengers

  committedFeb 10, 2023
  0d8dca0

Commits on Feb 9, 2023

• introduce lightweight metagenome mode#191

  oschwengers

  committedFeb 9, 2023
  65c13f7

Commits on Feb 7, 2023

• Incorporate PHROG db to improve the annotation of phage-borne genes oschwengers#43 (oschwengers#189)

  oschwengers

  committedFeb 7, 2023
  2a14a73

• Harmonize operon gene alleles oschwengers#186 (oschwengers#190)

  oschwengers

  committedFeb 7, 2023
  032bdf1

• add IS transposases to expert protein system oschwengers#10

  oschwengers

  committedFeb 7, 2023
  c0aae12

• add IS transposase to protein expert system oschwengers#10

  oschwengers

  committedFeb 7, 2023
  e3ce62a

• improve IS transposase annotation oschwengers#10

  oschwengers

  committedFeb 7, 2023
  fab2993

Commits on Jan 23, 2023

• pinpoint deepsig dependency versions

  oschwengers

  committedJan 23, 2023
  0bd0c94

• update mamba to 1.2.0

  oschwengers

  committedJan 23, 2023
  acd0781

Commits on Jan 19, 2023

• extract only valid gene symbols from VFDB

  oschwengers

  committedJan 19, 2023
  1cfde5b

• fix log msg

  oschwengers

  committedJan 19, 2023
  eb784bc

Commits on Jan 18, 2023

• add tool dependency paths to logs

  oschwengers

  committedJan 18, 2023
  ff82130

Commits on Jan 17, 2023

• bump alive-progess dependency to >=3.0.1

  oschwengers

  committedJan 17, 2023
  543298a

Commits on Jan 13, 2023

• amend db path error messages oschwengers#183

  oschwengers

  committedJan 13, 2023
  6b3a65c

• polish stdout parameter summary

  oschwengers

  committedJan 13, 2023
  93ec1ed

• improve expert system's DbXrefs oschwengers#183

  oschwengers

  committedJan 13, 2023
  6293d4b

• add model ID to expert hits oschwengers#183

  oschwengers

  committedJan 13, 2023
  83bf0ed

Commits on Dec 18, 2022

• Fix Citation.cff (oschwengers#179)

  St4NNi

  committedDec 18, 2022
  5254daa

Commits on Dec 9, 2022

• fix system-wide db path oschwengers#177

  oschwengers

  committedDec 9, 2022
  7a12ba3

Commits on Dec 6, 2022

• amend plot color description [skip ci]

  oschwengers

  committedDec 6, 2022
  b00516f

• add alt text to color imgs [skip ci]

  oschwengers

  committedDec 6, 2022
  d2b3938

• add plot description [skip ci]

  oschwengers

  committedDec 6, 2022
  f187525

• bump version to v1.6.1

  oschwengers

  committedDec 6, 2022
  d1e2598

• fix pyrodigal training mode on provided training files oschwengers#175

  oschwengers

  committedDec 6, 2022
  e37d332

Commits on Dec 1, 2022

• deactivate Circos max contig limit oschwengers#174

  oschwengers

  committedDec 1, 2022
  0962df7

Commits on Nov 25, 2022

• fix unbound config var oschwengers#174

  oschwengers

  committedNov 25, 2022
  0ad59de

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