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IMPROVE Framework

The Innovative Methodologies and New Data for Predictive Oncology Model Evaluation (IMPROVE) project was created under the Cancer Moonshot℠ as part of the NCI-DOE Collaboration to help address the need in the AI modeling community for a robust, reproducible, fair, and transparent way to compare AI models at scale. IMPROVE is intended to help address challenges in data-driven modeling for predicting cancer drug response by establishing consistent methodologies for model comparison and evaluation, and by enhancing machine learning models through novel data integration. IMPROVE also generates new data to reduce bias and improve performance based on the deficiencies seen in the current AI models we are testing. These data will be available to the public to improve future drug response models.

You can take a look at our documentation for more information about the project and examples of applying the framework.

Current release:

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  1. docs docs Public

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  2. Singularity Singularity Public

    Singularity definitions that can be extended to support execution of community models.

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  3. GraphDRP GraphDRP Public

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  4. Paccmann_MCA Paccmann_MCA Public

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  5. DualGCN DualGCN Public

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  6. HPO HPO Public

    Setup and configs for HPO runs

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Showing 10 of 61 repositories
  • JDACS4C-IMPROVE/GraphDRP’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 20 3 0 Updated Sep 23, 2024
  • IMPROVE Public

    Libraries and scripts for basic IMPROVE functionalities

    JDACS4C-IMPROVE/IMPROVE’s past year of commit activity
    Python 1 MIT 3 24 1 Updated Sep 23, 2024
  • UNO Public

    Standalone UNO repo for the IMPROVE project

    JDACS4C-IMPROVE/UNO’s past year of commit activity
    Python 0 0 0 0 Updated Sep 21, 2024
  • docs Public
    JDACS4C-IMPROVE/docs’s past year of commit activity
    Python 3 MIT 3 5 1 Updated Sep 20, 2024
  • PathDSP Public Forked from TangYiChing/PathDSP

    Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment Scores

    JDACS4C-IMPROVE/PathDSP’s past year of commit activity
    Python 0 MIT 9 1 0 Updated Sep 20, 2024
  • IGTD Public Forked from zhuyitan/IGTD

    Image Generator for Tabular Data (IGTD): Converting Tabular Data to Images for Deep Learning Using Convolutional Neural Networks

    JDACS4C-IMPROVE/IGTD’s past year of commit activity
    Python 0 MIT 58 3 (1 issue needs help) 0 Updated Sep 20, 2024
  • DeepTTC Public Forked from jianglikun/DeepTTC

    DeepTTC: a transformer-based model for predicting cancer drug response

    JDACS4C-IMPROVE/DeepTTC’s past year of commit activity
    Python 0 8 4 0 Updated Sep 20, 2024
  • tCNNS-Project Public Forked from Lowpassfilter/tCNNS-Project

    twin CNN channels on drugs and cancer cell lines

    JDACS4C-IMPROVE/tCNNS-Project’s past year of commit activity
    Python 0 9 1 0 Updated Sep 20, 2024
  • DeepCDR Public Forked from kimmo1019/DeepCDR

    Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network

    JDACS4C-IMPROVE/DeepCDR’s past year of commit activity
    Python 0 MIT 26 5 0 Updated Sep 19, 2024
  • HiDRA Public Forked from GIST-CSBL/HiDRA

    HiDRA

    JDACS4C-IMPROVE/HiDRA’s past year of commit activity
    Python 0 GPL-3.0 4 1 0 Updated Sep 13, 2024

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