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  1. stitcher.py stitcher.py Public

    stitcher.py reconstructs molecules from Smart-seq3 data.

    Python 7 4

  2. sandberg-lab/txburst sandberg-lab/txburst Public

    Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

    Jupyter Notebook 37 13

  3. sandberg-lab/Spreading-Correction sandberg-lab/Spreading-Correction Public

    Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

    Jupyter Notebook 15 4

  4. sandberg-lab/aRME_and_bursting sandberg-lab/aRME_and_bursting Public

    Code for analysis described in the article "Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance" (Larsson et. al 2021).

    Jupyter Notebook 1 1

  5. sandberg-lab/NASC-seq sandberg-lab/NASC-seq Public

    Code and analysis pipeline for NASC-seq.

    Python 11 2