Step20 is a C++20, header-only library of STL-like algorithms and data structures

Resolução dos problemas de Teoria de Computação 2019/2020

A file compression tool that implements BWT, MTF, LZW algorithms

Data Structures naively implemented in Kotlin for learning purpose

Suffix Array implemented in c/c++ exposed to python through cython.

Applications of Zuffix Arrays to String Search

Repository for the master course of Genome Informatics at the School of Electrical Engineering in Belgrade.

Suffix Array Library for Rust

DSAP Course Assignments 2022-2023

A Python-based implementation of the Burrows-Wheeler Alignment (BWA) algorithm for DNA sequence matching. This project leverages core data structures including the Burrows-Wheeler Transform (BWT), Suffix Array (SA), and auxiliary arrays (C, Occ) to enable efficient and accurate substring matching. It focuses on an unoptimized, recursive depth-first

Algorithms for Bioinformatics (CSE 463)

Various algorithms and data structures on strings

generating the suffix arrays for all the pacbiohifi reads

Best collection of Data Structures and Algorithms (Includes basic, advance & augmented data structures).

DNA palindrome may have significant role in DNA replication that are found frequently in human cancer cells. Data Structures - Suffix Array, Longest Common prefix Array.

Suffix array with support for multiple strings and associated payloads.

Text compression by abbreviation

Java implementation of the Manber Myers Suffix Array algorithm in the course "Efficient Algorithms" at Ostfalia University Wolfenbüttel in the summer term 2020.

Sternum is a python package to map next generation sequencing reads to a reference genome using optimized methods