photosynthesis
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Type an M x M matrix for your open quantum system Hamiltonian, and give a spectral density (analytic or numerical). FeynDyn gives the density matrix dynamics according to the Leggett-Caldeira bath or the Feynman-Vernon bath at any temperature. Can do up to 16 qubits (65536 levels) and infinitely many bath modes. Email nike@hpqc.org for the lates…
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Sep 7, 2022 - MATLAB
Code to reproduce the analysis and figures in 'A constraint on historic growth in global photosynthesis due to increasing CO2' Keenan et al. 2021. Nature https://www.nature.com/articles/s41586-021-04096-9
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Oct 17, 2023
An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.
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Sep 4, 2023 - C++
GUI for the C3 photosynthesis Farquhar, von Caemmerer & Berry model (1980)
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Jun 30, 2020 - MATLAB
Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client
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Aug 17, 2022 - JavaScript
APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab
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Jan 14, 2022
🍃 coupled leaf gas-exchange model
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Apr 15, 2024 - Julia
READY TO USE. Documentation associated with the leaf-level gas exchange data and metadata reporting format for the ESS-DIVE repository
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Apr 16, 2024
R scripts for automatic correction of Rapid A-Ci curves
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Sep 16, 2020 - R
An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.
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Sep 19, 2023 - C++
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Mar 27, 2018 - HTML
[accepted] This is my playground submitted for WWDC18 Scholarship
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Apr 5, 2018 - Swift
Small model to simulate biomass production on a global scale. Products are Gross Primary Production (GPP), Net Primary Production (NPP). It is based on a modified version of the Farquhar approach (Haxeltine and Prentice 1996, Farquhar et al. 1980). Where possible, it uses vectorization and parallelization and dynamically downloads latest av
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Feb 26, 2021 - R
coupled leaf gas-exchange model for C₄ leaves comparing stomatal conductance models
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Oct 12, 2023 - Jupyter Notebook
Yet another R package to analyse the light response of photosynthesis
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Aug 5, 2019 - R
R package to import files generated by the WALZ GFS3000 photosynthesis system
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Aug 5, 2019 - R
CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks
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Aug 15, 2022 - Jupyter Notebook
An R implementation of the P-model (new fork).
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Jun 22, 2021 - R
Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.
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Oct 2, 2021 - R
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