Bayesian haplotype-based mutation calling
-
Updated
Aug 12, 2023 - C++
Bayesian haplotype-based mutation calling
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
A python parser to simplify and build the VCF (Variant Call Format).
ClairS - a deep-learning method for long-read somatic small variant calling
Minor Variant Calling and Phasing Tools
Long sequencing reads classifier
An algorithm for recovering haplotypes from metagenomes
A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
An efficient genetic data imputation pipeline
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
Intersect multiple VCF files with haplotype awareness
Construct gene haplotype with VCF format files and snpEff annotation.
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Proteogenomics database-generation tool for protein haplotypes and variants
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
Split a BAM file by haplotype support
Haplotype Fixation Index for crop populations with homozygous nature, such as rice
A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly
Add a description, image, and links to the haplotypes topic page so that developers can more easily learn about it.
To associate your repository with the haplotypes topic, visit your repo's landing page and select "manage topics."